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Example control file listing







32              Number of files.
shake.lis		
coord_300K.lis		
1excl.lis		
2excl.lis		
3excl.lis		
4excl.lis		
14excl.lis		
m1excl.lis		
m2excl.lis		
m3excl.lis		
m4excl.lis		
bondlist.lis		
anglist.lis		
dihelist.lis		
imprlist.lis		
vdw.lis		
14vdw.lis		
bondpara.lis		
angpara.lis		
dihepara.lis		
imprpara.lis		
hbtrlist.lis		
hbacclis.lis		
hbdonlis.lis		
hbahmat.lis		
hbbhmat.lis		
hbhtype.lis		
load.lis		
typlist.lis		
units.lis		
flooding.lis		
restart.lis		
2               Requested number of nodes.
568             Number of atoms.
100             Freq. of analysis printout; next line is atom selection string:
A*
10              Frequency of writing restart file every analysis step!
0               Frequency of system call every analysis step.
ego2crd.sh
-1              Frequency of energy printout.
10000000        Number of integration steps.
1e-15           Integration time step in seconds.
5               Order of exclusion list.
FALSE           Switch for Minimisation.
1               Friction factor (1.0=>no friction, 0.0=>no motion).
0.08            Maximum position movement per integration step.
FALSE           Switch for Equilibration.
300             Target temperature in Kelvin.
1e-13           Coupling time constant in s.
8               Number of distance classes.
6.000000         0		
9.500000         6		
15.000000        4		
24.000000        4		
38.000000        4		
60.000000        4		
96.000000        4		
0               Used type of cluster algorithm (0 is default).
-2              Number of hierarchy levels.
-17             Number of branches on last level.
500             Frequency of reclustering.
out/            Path for output data.
0.4             for special 1-4 electrostatic damping.
FALSE           Switch for stochastic boundary.
FALSE           Switch for harmonic restraints.
TRUE            Switch for SHAKE on hydrogens (Only bond length).
0.000000   0.000000             x- and x+ SBound-planes.
0.000000   0.000000             y- and y+ SBound-planes.
0.000000   0.000000             z- and z+ SBound-planes.
0.000000   0.000000   0.000000  Center of spheric SBound (x,y,z).
0.000000                        Radius of spheric SBound.
0.000000                        Curvature of SBOUND edges.
0.000000                        Additional stochastic boundary thickness.
0.000000                        Maximum friction coefficient.
FALSE           Switch for using flooding.
FALSE           Switch for using transl/rotation correction.
1               Flooding energy in kT.
300             Flooding temperature in Kelvin.
END
0               DEBUG: 1 == compare with exact forces
0               DEBUG: only should be used by a developer
!*** Here starts the third section, the free format section.
TOTAL A1-20
DIHE  A1-20








Helmut Heller
2000-04-19