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This user manual starts with a semi-tutorial ``Getting Started''
(Chapter 2) followed by chapters which describe the
structure of the EGO program in more detail. Several appendices summarize
other relevant information such as file formats, and the differences
between EGO and X-PLOR program.
Read Chapter 2 for a quick introduction on how to create
an EGO dataset and run a simple simulation.
(You might have to use the structure
editing features of the X-PLOR program to create the needed PSF
topology description files for your PDB files and molecule structures).
Chapter 4 describes the dynamics control parameter settings
in more detail.
Chapters 5 and 6 describe the
implementation of the program and the modified
Verlet integration method used by EGO, respectively.